PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI08G14790.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 367aa MW: 38418.9 Da PI: 6.3136

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI08G14790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	187	235	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OMERI08G14790.1 187 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 235 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-17	181	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-10	182	239	No hit	No description
PROSITE profile	PS50888	15.51	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-16	186	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-7	187	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-10	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV 60 SPSTGAATAA SGGGGFLLPP AAVRGGFGSF PVNSGGIVEP AGDCSSESKK KRRSDEIAGT 120 DRANASNALA DSGNETECSK DANGEVIGPP ATAAAGGKSK GKGAKDAGEA QKEGYSHVRA 180 RKGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK ALMLDEIINY VQSLQSQVEF 240 LSMKLSAVNP RIDLDIESLV NNSKDVLQFP GQPSSAPMGF SFSPEMMPGL QLSRPGILQG 300 GVHGMINPDV FTSLMQKQQQ NDKGAFREPQ MHQTLDGSFH NTAQIPYPQV MSSEELSIRQ 360 DQDGFHM

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGGGGFLLPP AAVRGGFGSF PVNSGGIVEP AGDCSSESKK KRRSDEIAGT  120
DRANASNALA DSGNETECSK DANGEVIGPP ATAAAGGKSK GKGAKDAGEA QKEGYSHVRA  180
RKGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK ALMLDEIINY VQSLQSQVEF  240
LSMKLSAVNP RIDLDIESLV NNSKDVLQFP GQPSSAPMGF SFSPEMMPGL QLSRPGILQG  300
GVHGMINPDV FTSLMQKQQQ NDKGAFREPQ MHQTLDGSFH NTAQIPYPQV MSSEELSIRQ  360
DQDGFHM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	112	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004557	1e-169	AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBank	AP014964	1e-169	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-169	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650276.1	0.0	transcription factor bHLH79
Swissprot	Q9CAA9	2e-48	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A0E0EMK6	0.0	A0A0E0EMK6_9ORYZ; Uncharacterized protein
STRING	OMERI08G14480.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	1e-47	cryptochrome-interacting basic-helix-loop-helix 5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]