PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G14660.7
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 822aa    MW: 88332.4 Da    PI: 7.7794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G14660.7genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006340362123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  H  +H
  OMERI08G14660.7 340 FECPVCNKTFEEQSRYFGHVGSH 362
                      89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.907182255IPR001739Methyl-CpG DNA binding
SuperFamilySSF541715.23E-7186237IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.103.8E-4187236IPR001739Methyl-CpG DNA binding
PfamPF014291.8E-5192235IPR001739Methyl-CpG DNA binding
SMARTSM003550.41291314IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293314IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328340367IPR007087Zinc finger, C2H2
SMARTSM003550.023340362IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
METEVFPVVD LRVLTQSDLD ELATASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP  60
AAAAAAAAAA ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSSPQTQT LALPAPPSPD  120
PDQLTTNSRG VSVDLVGLSR LADPYDAELG KRTAGMTTEE ELMGFISSLA GQWVSQRMRR  180
KLVDASFFGD HLPSGWRLQL GIKRKDRKAW VNCFSYVSPK GQSFATCQEV SAYLMSLLGY  240
PEFKTDNIEY GVQHQIGTGM DSQSILPVAS ITFSSHSRDQ DETDADDINS YECQQCNLTF  300
HGQSAYAHHL ITFHKMGSKR RKINKVGKFG EPVIGKDGKF ECPVCNKTFE EQSRYFGHVG  360
SHAKYHGLTP EAFLQTLSGK VGLSCSIQDL VGSPQLNEKT TASEARSQHH NCSTKHGGNS  420
TRDAPSTWTY RNNVTNCADR TVPRTAPQPN DHMDCRVSGF AEATNFNDQA GRHQGFRPSS  480
FGTTNHCQGQ IIDHAVAASK HAEVNNSMKS RDVNLNSRLN TISFPIATAN NETSTALNDV  540
NRSCITGKGF SGSFSNNDGA ASIVLPSSGF NNKIPSSLGV ADRSSVAARS FNAGYVNENG  600
ASEANNIGNK NNTMVYQTSL AMRPVSPCDL QLGFSGQKQQ ILPGYGELRP AASGSPQLGG  660
MAANSSIPTR PSQPQFGSMA RTDALPTGPS QPGSLARPNF VPTGFSQFAS RPPTSVPPAD  720
SSQFAGGMAR QNIPTTSEPT LVLGYTPQMV NGPPAQLGWD LSLSRMVSEG MLPVLCIWCN  780
SQFHHFGPID AQQSGSFGFI CPACKEKMSG NPNAPNNGPW QP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681310.0AK068131.1 Oryza sativa Japonica Group cDNA clone:J013130L03, full insert sequence.
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650381.10.0uncharacterized protein LOC4345880 isoform X2
TrEMBLA0A0E0EMI70.0A0A0E0EMI7_9ORYZ; Uncharacterized protein
STRINGOS08T0485700-010.0(Oryza sativa)