PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G14560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 320aa    MW: 35390.6 Da    PI: 6.2036
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G14560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.45.1e-2030114286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W + e+++L++a++e+++rlrrg+lk+++Weev++ +      +   ++++ +qC++k+e+l+kry+ + ++         s +pyf+++e
  OMERI08G14560.1  30 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 114
                      *************************************999987777889*****************988776664......68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1828116No hitNo description
SMARTSM005954.0E-537121IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAQEAAAAAA AAGEEGALPQ RRKSAPGQPW AHMETMHLLD AYEERWTRLR RGQLKAQQWE  60
EVAADVAARC AASGAALRKT GTQCRHKLEK LRKRYRIEGA RPVTSLWPYF RRMERLERGP  120
LPVSSAFPPP PPAASPPAAA SDEDDDDDDD EEEDDEEEEE VEEPIPRNNT RSINGILRDS  180
GGGGGFSGFA PRPPPQQPPP SFAMLSTAPP RKRVPYEAFQ AKAAMADKVK EEEPPPVATR  240
PGGGANEQLS AVLRDFGQGI MRLERRRMEM QWEIDRGWKE TEARHNRMLL DAQRHLHEAL  300
AAAPPPAKKA RREHGGGDGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059180.0AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648379.11e-142trihelix transcription factor ASIL2
TrEMBLA0A0E0EMH00.0A0A0E0EMH0_9ORYZ; Uncharacterized protein
STRINGOMERI08G14280.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-19Trihelix family protein