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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OMERI08G14560.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 320aa MW: 35390.6 Da PI: 6.2036 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OMERI08G14560.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.4 | 5.1e-20 | 30 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e
OMERI08G14560.1 30 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 114
*************************************999987777889*****************988776664......68*******8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MAQEAAAAAA AAGEEGALPQ RRKSAPGQPW AHMETMHLLD AYEERWTRLR RGQLKAQQWE 60 EVAADVAARC AASGAALRKT GTQCRHKLEK LRKRYRIEGA RPVTSLWPYF RRMERLERGP 120 LPVSSAFPPP PPAASPPAAA SDEDDDDDDD EEEDDEEEEE VEEPIPRNNT RSINGILRDS 180 GGGGGFSGFA PRPPPQQPPP SFAMLSTAPP RKRVPYEAFQ AKAAMADKVK EEEPPPVATR 240 PGGGANEQLS AVLRDFGQGI MRLERRRMEM QWEIDRGWKE TEARHNRMLL DAQRHLHEAL 300 AAAPPPAKKA RREHGGGDGS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005918 | 0.0 | AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |