PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G14480.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 380aa    MW: 39587.1 Da    PI: 5.7754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G14480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13155205154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k++
  OMERI08G14480.1 155 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 205
                      79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.75E-14153210No hitNo description
SuperFamilySSF474593.14E-17154223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14155222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-11155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGGG AMAAEAAAGG AWSWSHGYGG GVDQGKGVSH GYGGGVDQGK  60
GVMELVVDDG VVNAFWDGGG GGASSSPVMA AVPGFIEEPD GGNSSVADAA PPPPEHGGAA  120
VVGRDGAAAA PAAAAGRRKR RRARTVKNRE EVESQRMTHI AVERNRRKQM NEYLAVLRSL  180
MPASYVQRGD QASIIGGAIN YVKEMEQLLQ SLEAQRHARR ARTDDVAAAA LPFEGFFTFP  240
QYSMSATPTT TATAAASATE NGNAVAGAGA DDEADASGSK PSSVADIEVT MVESHANLKV  300
LSRLRPRQLL RMVAGLQHHR LAVLHLNVAS AGHMALYSLS LKVEDDCQLT SVDDIAAAVH  360
GIVETIEQEQ QQQQQKQSCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137141RKRRR
2155166RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649413.11e-170transcription factor bHLH96
SwissprotQ9C7T45e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0EMF40.0A0A0E0EMF4_9ORYZ; Uncharacterized protein
STRINGOMERI08G14220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]