PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G06880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 303aa MW: 31766.8 Da PI: 10.6206 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 7e-31 | 242 | 300 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YYrC++ gCp++k+ver+a+dp ++++tYeg+H+h+ OMERI08G06880.1 242 ADEYSWRKYGQKPIKGSPYPRGYYRCSTVkGCPARKHVERAADDPATLVVTYEGDHRHS 300 69************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.2E-15 | 205 | 239 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-32 | 228 | 302 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.605 | 236 | 302 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 239 | 302 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-36 | 241 | 301 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-26 | 243 | 299 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAVDLMGFSP RGGCRPSVEM EQLAFQEAAA AGLRSLELLV SSLSAGGEHH HHHHRPQQKQ 60 SSPPLGEIAD QAVSRFRKVI SILDRTGHAR FRRGPVVGAA AAEASASASP SSSPISPPLP 120 PVTTQPAAAV KSLTLDFTNP AKVAAASVTS TSFFSSVTAG GDGSVSKGRS LVSSGKPPLA 180 GGVKRKHPNP HPHPPYAAGG DGHGHGAAHS HGGCHCSKKR KQRVRRTVRV AAASAQVADI 240 PADEYSWRKY GQKPIKGSPY PRGYYRCSTV KGCPARKHVE RAADDPATLV VTYEGDHRHS 300 PPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-23 | 229 | 302 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT835958 | 0.0 | CT835958.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI102B05, full insert sequence. | |||
GenBank | CT835959 | 0.0 | CT835959.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI103A11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648791.1 | 1e-135 | WRKY transcription factor WRKY51-like | ||||
Swissprot | Q9SV15 | 3e-85 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0E0EJF2 | 0.0 | A0A0E0EJF2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G06830.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 7e-55 | WRKY DNA-binding protein 11 |