PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G04810.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 425aa    MW: 43230.3 Da    PI: 6.8565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G04810.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000233083471054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  OMERI08G04810.3 308 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 347
                      556667777777888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-12297367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.446298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-5301351No hitNo description
Gene3DG3DSA:4.10.280.107.7E-9302367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYGGG GGGAAGGATT TTGSHGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG VADPAAIAVH  120
AQTVAGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHHH IKTPSLMSHS SSNNSVMLQD  180
HHHDQNYQFL SNLGFELLSS PTSPYGGSGG GGGFRSSLLR SLTEPPAAAV AKPNNSPGFQ  240
QYHNHQHQPA MNLQPPAAAG REPLQFTNST AAPFWNPSSG FTVAADGAAL GGAGASPAQT  300
TPASLAAKVR KEKLGDRVTA LQQLVSPFGK TDTASVLHET IEYIKFLHDQ VGALSAPYLK  360
NRQQVLHLKN SAGVDNDGGG GGEATAASKR DLTGRGLCLV PISSTFAVAS ETPVDFWTPF  420
GAAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0EIN60.0A0A0E0EIN6_9ORYZ; Uncharacterized protein
STRINGONIVA08G04680.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-36bHLH family protein