PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G04810.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 282aa    MW: 29839 Da    PI: 8.5322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G04810.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000131652041054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  OMERI08G04810.2 165 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 204
                      556667777777888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-12154224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.446155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-6158208No hitNo description
Gene3DG3DSA:4.10.280.103.9E-9159224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSSSRNDHHT NHHHHHHIKT PSLMSHSSSN NSVMLQDHHH DQNYQFLSNL GFELLSSPTS  60
PYGGSGGGGG FRSSLLRSLT EPPAAAVAKP NNSPGFQQYH NHQHQPAMNL QPPAAAGREP  120
LQFTNSTAAP FWNPSSGFTV AADGAALGGA GASPAQTTPA SLAAKVRKEK LGDRVTALQQ  180
LVSPFGKTDT ASVLHETIEY IKFLHDQVGA LSAPYLKNRQ QVLHLKNSAG VDNDGGGGGE  240
ATAASKRDLT GRGLCLVPIS STFAVASETP VDFWTPFGAA FR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-170CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.11e-151transcription factor bHLH112 isoform X2
TrEMBLA0A0E0EIN50.0A0A0E0EIN5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EIN60.0A0A0E0EIN6_9ORYZ; Uncharacterized protein
STRINGOPUNC08G04650.11e-154(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-37bHLH family protein