PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G02290.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 960aa    MW: 105784 Da    PI: 8.9164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G02290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07321341526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f + G C++G++C++ H+
  OMERI08G02290.1 321 PCHDFVK-GRCSRGANCRYVHD 341
                      8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.018232257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4236256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267236258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126316343IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021316342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4319342IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4321341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817375402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7376400IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5376401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4379401IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGNDLL PSQDFGHGND  60
KQIGESVNLK STVSMHHGSA GHEQDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW  120
HNRGFEKAAG NQGMSRYADD RRRGDGWGTT LSRGYSSRIS SSGPDAWKRS RSPLSPRGGW  180
NRSRRNRSRS RSRSRSRSIG RGRGRSRSRS RSPYFSDRGS EWRVERGRSS GGPALPCRDF  240
VAGRCRRGSN CRFPHEDGVR RQFDEHYPVD SRERYGHQNR DFMDPREQDD YLRSRPPRGG  300
HYDEGTWERS EPRREYRSTM PCHDFVKGRC SRGANCRYVH DDSTSHGGWR DEVRDNAIGR  360
SGPDSSYGNR TEHRRTNKNP CKFFANGGCR RGQNCPYLHE EASQSQMGLG APDEAGYTGG  420
PTTRGDYSSW SEQNNSVQAS SHVLSRDDRE NHVPQGTGRN DSRYENKNRH SKDAGSSQYQ  480
IFPQDDFGSV GQNKPEIAAS QLPQFIPSVQ TGTESINIDK VSDMGGQSGP GTVGNLSMQI  540
GMHSANLLGG HNLGQKAESQ DAISQISAAP SLPGATQFQN TTSSVPLNSQ VQQSDFSLHP  600
NRQDQFAVPH ATTNNSAPSM QSQPVAPYMG HSQHGYIMGA QSLPDLSVHN GQIFNVGQVP  660
QNLPTIVHAG QNQATSDTAN LGRDSGDQSL HNTHNFQPVA PNEQTQSQTL QGLSVVASSS  720
SVDMAGAPLS HNAVSSQEEV RRVTASLAQY FAPSLTADTS GLQSSQPDPN SSLMNNSSAA  780
PQAVQPNHWP WLQQAGMVQP SHIVPSEQPA PQTFQAPMAA GSSNGNPLIL PHSVAPTGPA  840
AALVTNETTP AENKKEEPKD TDAEANEDGE NKKSKDSKAL KMFKLALADF VKDALKPTWK  900
EGQMSREVHK TIVKKVVDKV TTTVENTPQT KEKIDIYMSY SREKLNKLVQ AYVGKYAKKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200210RGRGRSRSRSR
2202210RGRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004550.0AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650360.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_025883327.10.0zinc finger CCCH domain-containing protein 55
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A0E0EHM10.0A0A0E0EHM1_9ORYZ; Uncharacterized protein
STRINGOMERI08G02340.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-09C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]