PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G23320.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 473aa MW: 50467.9 Da PI: 5.4723

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G23320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.8e-39	101	160	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s OMERI07G23320.1 101 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSS 160 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	98	158	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MDDLAAASPP HPPPESHVPP PPQTPEKDSC EDTGDMRISE EKPCTDQELD ADQTNSSSFN 60 SSSECENQTP SNDEMTGSES KSEAAQTEGG GSSEEKVLKK PDKILPCPRC NSMDTKFCYY 120 NNYNINQPRH FCKSCQRYWT AGGSMRNLPV GAGRRKSKSS TANCRSILIP GSNLAAPAGD 180 APLYQLSIKG DQTATAVKFA PDSPLCNSMA SVLKIGEQSK NAKPTSTAQP RNGETQTCPA 240 SGTTSDSPRN EPVNGAVSGH QNGIVGHSGV PPMHPIPCFP GPPFVYPWSP AWNGIPAMAP 300 PVCPAPAEPA NSSDNGSTTS VQWSMPPVMP VPGYFPVIPS SVWPFISPWP NGAWSSPWIQ 360 PNCSVSASSP TSTSTCSDNG SPVLGKHSRD SKPQGDDKAE KNLWIPKTLR IDDPDEAAKS 420 SIWTTLGIEP GDRSMFRPFQ SKPESREQIS GAARVLQANP AALSRSQSFQ ETT

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MDDLAAASPP HPPPESHVPP PPQTPEKDSC EDTGDMRISE EKPCTDQELD ADQTNSSSFN  60
SSSECENQTP SNDEMTGSES KSEAAQTEGG GSSEEKVLKK PDKILPCPRC NSMDTKFCYY  120
NNYNINQPRH FCKSCQRYWT AGGSMRNLPV GAGRRKSKSS TANCRSILIP GSNLAAPAGD  180
APLYQLSIKG DQTATAVKFA PDSPLCNSMA SVLKIGEQSK NAKPTSTAQP RNGETQTCPA  240
SGTTSDSPRN EPVNGAVSGH QNGIVGHSGV PPMHPIPCFP GPPFVYPWSP AWNGIPAMAP  300
PVCPAPAEPA NSSDNGSTTS VQWSMPPVMP VPGYFPVIPS SVWPFISPWP NGAWSSPWIQ  360
PNCSVSASSP TSTSTCSDNG SPVLGKHSRD SKPQGDDKAE KNLWIPKTLR IDDPDEAAKS  420
SIWTTLGIEP GDRSMFRPFQ SKPESREQIS GAARVLQANP AALSRSQSFQ ETT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK104095	0.0	AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.
GenBank	AY224430	0.0	AY224430.1 Oryza sativa (japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647890.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0EGB4	0.0	A0A0E0EGB4_9ORYZ; Uncharacterized protein
STRING	OMERI07G23800.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-79	cycling DOF factor 2