PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G23060.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 336aa    MW: 35131.9 Da    PI: 6.4155
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G23060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.6e-23125186259
                      --SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg +WrKYGqK++++s+ +prsYYrCt++   gC+++k+v++s+++ + ++i Y geH+++
  OMERI07G23060.1 125 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQTSESNSSEFVISYYGEHTCR 186
                      89**************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-25110188IPR003657WRKY domain
SuperFamilySSF1182906.67E-23117188IPR003657WRKY domain
PROSITE profilePS5081120.346119188IPR003657WRKY domain
SMARTSM007743.4E-34124187IPR003657WRKY domain
PfamPF031067.7E-23125186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASPDGGVGD GGGSPAAEPH EVMDDLLEMR EQAAILHNML QGTSPPSCVA ASTRQLNQLI  60
DGVVSRLQSS SLSVMSPGGG GGRRGSGGRK KKGATAVAGP HRRSSSGRRR SKSPFVRMVT  120
TKELEDGRQW RKYGQKHIQD SPNNPRSYYR CTHRPDQGCM ATKQVQTSES NSSEFVISYY  180
GEHTCRDPST IPFVVEAEAP AADYANLISF GSSGGASTSR VDPLRQSHHR LMAEAIDPTP  240
SCSFANCHSP VLSPECASEA AALSSSLPLS AVVGSAVTTP STSIVGSAPA DYDWPSGLAG  300
GDMAGSFPSS PSSLGFMTGS FGNLPGDDDD MFGFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20119186369OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109000.0AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646872.10.0probable WRKY transcription factor 70
RefseqXP_015646873.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0EG840.0A0A0E0EG84_9ORYZ; Uncharacterized protein
STRINGOMERI07G23510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-19WRKY DNA-binding protein 46