PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G19420.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 298aa MW: 32963.7 Da PI: 7.0736

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G19420.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.6	3e-05	35	74	1	44
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 +r ++erE+ Rd+ N+ f+eL ll ++ + + Ka +L OMERI07G19420.3 35 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVL 74 68899**********************996....3445555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.2E-8	31	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-11	31	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.153	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0019843	Molecular Function	rRNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVPRDRVNAA AGGGGEGRLV QSGIGNVKCD KKAPKRIHKS EREKLKRDKQ NDLFNELGNL 60 LEPDRQNNGK ACVLGETTRI LKDLLSQVES LRKENSSLKN ESHYVALERN ELHDDNSMLR 120 TEILELQNEL RTRMEGNPVW SHVNTRPALR VPYPTTRVFP VQHLPHLPVT TTAAFSQQQP 180 VIIEQHYATT PRELQLFPES ATSEDSEPSQ AHGISDHVTR PQPRYPTPTA TLPVNLFPVL 240 PGRQDQQCSS GTSGTNEEDR IGHIDFSLTS PLGGGPAGRV KRKNQKASGG GGDGEEEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070963	0.0	AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
GenBank	HQ858856	0.0	HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645391.1	1e-179	transcription factor BHLH062-like
Refseq	XP_015645393.1	1e-179	transcription factor BHLH062-like
Swissprot	Q69V10	1e-180	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A0E0EER3	0.0	A0A0E0EER3_9ORYZ; Uncharacterized protein
STRING	OMERI07G19840.2	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-36	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]