PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17250.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 305aa    MW: 33090.6 Da    PI: 6.884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016221243123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C   F++   L  H+r+H
  OMERI07G17250.1 221 HKCSICRLEFPSGQALGGHMRVH 243
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.64E-8174243No hitNo description
PROSITE profilePS501578.663175197IPR007087Zinc finger, C2H2
SMARTSM003550.89175197IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-8175198IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SMARTSM003550.025221243IPR015880Zinc finger, C2H2-like
PfamPF139127.6E-9221243IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621221243IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
METDGMINMP CLDGLISNKN RSETDAYVFL KLLASSSGGN NIMGPHDSPA RCVEYSYSPT  60
CRYGTFATGG CDKFYEPLGW RKQKPSVPPL SPTPVDFRAH QVFPSKHHDF DASKSRNISG  120
SVAIGSDSEE EYLATSLLML AHGIRDETED IRGMGDVKGV GVDTLELVKP SQRGYECSVC  180
GKVYWCYQAL GGHMTCHRNL FAQVVAGDEL SSDGTMVVKG HKCSICRLEF PSGQALGGHM  240
RVHYVGGVEG GSVKEKNVVK TKVTGALKPM LKDFDLNVPV VATMVGDEAE SSHSEAKRAR  300
MMTLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY3952940.0AY395294.1 Oryza sativa (japonica cultivar-group) C2H2-type zinc finger transcription factor (ZFP39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647208.11e-154zinc finger protein AZF3
TrEMBLA0A0E0EDU10.0A0A0E0EDU1_9ORYZ; Uncharacterized protein
STRINGOBART07G20580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-22C2H2 family protein