PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 26337.3 Da PI: 7.3032

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G16720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.5e-19	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k OMERI07G16720.1 63 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 116 45589***********************************************99 PP
2	HD-ZIP_I/II	116.3	1.8e-37	63	153	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l OMERI07G16720.1 63 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 153 9**************************************************************************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.293	58	118	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.77E-17	59	117	IPR009057	Homeodomain-like
SMART	SM00389	9.7E-17	61	122	IPR001356	Homeobox domain
CDD	cd00086	1.84E-14	63	118	No hit	No description
Pfam	PF00046	4.1E-16	63	116	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.9E-18	63	116	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	98	114	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDRYGEKQQQ QQMFASYVDA SLLAASGEVQ GERPRARRRR RHGARYGGGG GGGGGEVDGG 60 DPKKRRLSDE QVEMLELSFR EERKLETGRK VHLASELGLD PKQVAVWFQN RRARHKSKLL 120 EEEFSKLKHA HDAAILHKCH LENEVLRLKE RLVVAEEEVR RLRSAAGSHT ASGEGGDIMG 180 LGGGACVAGS PSSSFSTGTC QPPSFGGGGG GDHLGDDDLV YVPEYGGYAG NSVAEWFSLY 240 GLI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121889	0.0	AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646179.1	1e-128	homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	1e-129	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A0E0EDM6	1e-174	A0A0E0EDM6_9ORYZ; Uncharacterized protein
STRING	OMERI07G17060.1	1e-175	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-31	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]