PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G13960.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 306aa    MW: 32966.6 Da    PI: 12.164
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G13960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.12e-15134194257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++ +eq+++Le+ F++   +p ++e+  + ++l    ++ +++V++WFqNr+ + k+
  OMERI07G13960.1 134 KPRRNPRPEQIRILEAIFNSgMVNPPRDEIPLIRMQLqeygQVGDANVFYWFQNRKSRSKN 194
                      89*****************99*************************************995 PP
2Wus_type_Homeobox102.92.2e-33133195264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++R +P+peQi+iLe++++sG+++P+++ei  i+++L+eyG+++d+NVfyWFQNrk+R+++k
    OMERI07G13960.1 133 PKPRRNPRPEQIRILEAIFNSGMVNPPRDEIPLIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 195
                        578**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.75130195IPR001356Homeobox domain
SMARTSM003892.9E-5132199IPR001356Homeobox domain
SuperFamilySSF466892.18E-10133196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-6133197IPR009057Homeodomain-like
CDDcd000869.45E-6133195No hitNo description
PfamPF000464.5E-13134193IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMALGVPPPP SRAYVSGPLR DDDTFGGDRV RRRRRWLKEQ CPAVIVHGGG RRGGVGHRAL  60
AAGVSKMRLP ALNAATHRIP STSPLSIPQT LTITRDPPYP MLPRSHGHRT GGGGFSLKSS  120
PFSSVGEERV LDPKPRRNPR PEQIRILEAI FNSGMVNPPR DEIPLIRMQL QEYGQVGDAN  180
VFYWFQNRKS RSKNKLRSGG AGRAGLGLGG NRASAPPAAA TAHREAVAPS FTPPPILPPQ  240
PVQPQQQLVS PVAAPTSLSS SSSDRSSGSS KPARATLTQA MSVTAAMDLL SPLRRSARPR  300
QEQRHV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0067530.0AP006753.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646013.11e-134WUSCHEL-related homeobox 13
SwissprotA3BKM20.0WOX13_ORYSJ; WUSCHEL-related homeobox 13
TrEMBLA0A0E0ECF40.0A0A0E0ECF4_9ORYZ; Uncharacterized protein
STRINGOMERI07G14130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-36homeobox-3