PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G10850.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 271aa MW: 28249.2 Da PI: 4.4202

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G10850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.8	1.9e-23	182	226	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e OMERI07G10850.1 182 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 226 69************************************9998875 PP
2	QLQ	54.2	4.2e-19	116	151	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k OMERI07G10850.1 116 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 151 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-8	115	151	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.4E-12	116	150	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.922	116	151	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.302	182	226	IPR014977	WRC domain
Pfam	PF08879	1.3E-19	183	221	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MAAEGEAKKD SASNPPGGGG GGGGGEEEED SSLAVGEAAV GVGEAGGGGG GEKADREGEE 60 EEEGKEDVEE GGVCKDLVLV EDAVPVEDPE EAAATAALQE EMKALVESVP VGAGAAFTAM 120 QLQELEQQSR VYQYMAARVP VPTHLVFPIW KSVTGASSEG AQKYPTLMGL ATLCLDFGKN 180 PEPEPGRCRR TDGKKWRCWR NAIANEKYCE RHMHRGRKRP VQLVVEDDEP DSTSGSKSAS 240 GKATEGGKKT DDKSSSSKKL AVAAPAAVES T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066400	0.0	AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644678.1	1e-152	growth-regulating factor 11
Swissprot	Q6AWX8	1e-153	GRF11_ORYSJ; Growth-regulating factor 11
TrEMBL	A0A0E0ENF6	0.0	A0A0E0ENF6_9ORYZ; Uncharacterized protein
STRING	OMERI07G10840.1	0.0	(Oryza meridionalis)
STRING	OMERI08G16750.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-29	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]