PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G05820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 388aa    MW: 40116.1 Da    PI: 6.7485
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G05820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.11.1e-24265327163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+eL++eN+aL++el++lkk ++ +++e+
  OMERI07G05820.1 265 ERELKRERRKQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAEN 327
                      89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165964.4E-8129242No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-17264324No hitNo description
SMARTSM003383.4E-22265329IPR004827Basic-leucine zipper domain
PfamPF001704.7E-22265327IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.553267330IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-12268323No hitNo description
CDDcd147023.22E-22270320No hitNo description
PROSITE patternPS000360272287IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAAA VAAVAGTAVA TAAAAVPTHA EWAASLQAYY AAAGHPYAWP  60
AQHLMAAAAA GAPYGAPVPF PMYHPGAAAA YYAHASMAAG VPYPTAEAMA AAAGAVPEGK  120
GKGKGAAASP EKGSSGAPSG DDASRSGDSG SEESSDTRDD DTDHKDSSAP KKRKSGNTSA  180
EGEPSQATLV PYAAVESPYP LKGRSASKLP VSAPGRAALP NATPNLNIGI DLWNTPPALA  240
VPAGQGEASP GLALARRDGV AHLDERELKR ERRKQSNRES ARRSRLRKQQ ECEELARKVA  300
ELTTENSALR SELDQLKKAC EDMEAENTRL MGDKAQYKGP TVTTTLGMSI DSSKTQHHDD  360
EGQLHKNTNN NSNGNYVGGS HKPEANSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281287RRSRLRK
2281288RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891790.0AK289179.1 Oryza sativa Japonica Group cDNA, clone: J100028J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644731.10.0DNA-binding protein EMBP-1
SwissprotP250322e-60EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0E0E9190.0A0A0E0E919_9ORYZ; Uncharacterized protein
STRINGOMERI07G05830.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-23basic region/leucine zipper transcription factor 16