PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G04600.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 366aa MW: 38347.6 Da PI: 4.9105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G04600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	184	231	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq OMERI07G04600.1 184 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 231 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.97E-17	178	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-10	178	235	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-17	180	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	180	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	184	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MDSDYVAGLL MSAAAAGLDL GVLDGGGGGF LDTLCGGPGF AERAARLCGG GGGGAGLFGL 60 PAAGNAERGG GSREGSSVSD PAWAHAGGGA NARKRKAPAS AAAGKDKDAV VDGGGSPCEV 120 GEAKAPDSKK CKAEVNPKVE EAASDGSVGD RVQKQGKGKN SKPAAEPPKD YVHVRARRGQ 180 ATDSHSLAER VRREKISQRM KVLQDLVPGC NKVVGKALML DEIINYVQSL QQQVEFLSMK 240 LATVNPQLDF GNLSTLLQKD MFQSCGPSVN SVFPLESAGT AFPFCDQADF FQSFGLGAME 300 NQCSLDLANT ALPHTGSTQY AFQKQQRDLW EDNAFQYNDE QRQEDAVSAP NFDGQLQAAD 360 HTEIEF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MDSDYVAGLL MSAAAAGLDL GVLDGGGGGF LDTLCGGPGF AERAARLCGG GGGGAGLFGL  60
PAAGNAERGG GSREGSSVSD PAWAHAGGGA NARKRKAPAS AAAGKDKDAV VDGGGSPCEV  120
GEAKAPDSKK CKAEVNPKVE EAASDGSVGD RVQKQGKGKN SKPAAEPPKD YVHVRARRGQ  180
ATDSHSLAER VRREKISQRM KVLQDLVPGC NKVVGKALML DEIINYVQSL QQQVEFLSMK  240
LATVNPQLDF GNLSTLLQKD MFQSCGPSVN SVFPLESAGT AFPFCDQADF FQSFGLGAME  300
NQCSLDLANT ALPHTGSTQY AFQKQQRDLW EDNAFQYNDE QRQEDAVSAP NFDGQLQAAD  360
HTEIEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059036	0.0	AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651378.1	0.0	transcription factor BHLH089-like
Swissprot	Q9SRT2	1e-57	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0E0E8L0	0.0	A0A0E0E8L0_9ORYZ; Uncharacterized protein
STRING	OMERI07G04630.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	6e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]