PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G04150.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 254aa    MW: 27552.3 Da    PI: 7.4707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G04150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11136183455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  OMERI07G04150.1 136 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 183
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-11130187No hitNo description
SuperFamilySSF474593.53E-18130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18132200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDPDPSLAAE LWRPHHHHHH HLEASSVVTD QGSGSRGGGG SGRRRPRRDA GPEDDDSSKV  60
VSTSAASAGG GQDSVAPEAK RLKPMKSSDK NDSLRTEAGT DSGNSSKAAD KNATPPEPPK  120
QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAS VLDEIINYIQ  180
SLQHQVEFLS MKLEAVNSHT NNGIVAFPSK DFGAQPYNTA AGLTFDPQTT REFAQGSTSE  240
WLHMQIGNAY ERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.11e-159transcription factor BHLH094-like
SwissprotQ69WS31e-160BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0E0E8D60.0A0A0E0E8D6_9ORYZ; Uncharacterized protein
STRINGOMERI07G04160.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-68BIG PETAL P