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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G03390.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 786aa MW: 84410 Da PI: 6.4489 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.2 | 5e-16 | 470 | 508 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk OMERI07G03390.2 470 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 508 589**********************************96 PP | |||||||
2 | TCR | 50.9 | 3.1e-16 | 556 | 595 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ OMERI07G03390.2 556 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 595 589***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.8E-17 | 469 | 510 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.33 | 470 | 596 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.9E-12 | 472 | 507 | IPR005172 | CRC domain |
SMART | SM01114 | 1.7E-17 | 556 | 597 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.1E-12 | 558 | 594 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
MDTPDRAAAA PSAAARAEDS PLFSFIDSLS PIEPLKSAYS ASSIQAYQSL NITSISSIFT 60 SPHDNAQKES KLSKSSFAEF SESEVCADES DKNKPSKSSN AVRLFACTST LTQATHKITS 120 SVSEGTVGPP EGSNNLPPPG QFDSGSPDHN TTPCHGVRSD LKQGKCRKLQ AFQAAKTNTS 180 EKRKCLFSTE VQLMDGCQPE KLNDEILGCD WDDLISATSG ELIAYDEDHK GVQLAVSNAE 240 SCGFLLSKLT GDGDISDRTH PSSSTQTYYR ELLMDEDQTE NAQLVPDGEK NISTEEIQDN 300 LYEANGSIPT GYKVETQQQR GMRRRCLVFE AAGYSNRIVQ KESVMDLSVS TCKGKSPVQN 360 HSNPGKTPSP RVLRGIGLHL NALALTSKDK MVCQDPISSL VPSSATQQEA HGKMLSAGEN 420 FIHSGSELLE LQMDDDCSAG VFLGNDHDSS QSNSPQKKRR KADNGDDGEA CKRCSCKKSK 480 CLKLYCECFA AGVYCSEPCS CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDAG 540 QDITGEDPNN TPASARHKRG CNCKKSSCLK KYCECYQGGV GCSSNCRCEG CKNTFGKRDA 600 AVSTEAEEMK QGGEEAENCG KEKENDLQKA NVQSEDQPFL ELVPITPPFD VSSSLLKPPN 660 FSSAKPPRPT KARSNSSRSS SKAPGAVHSQ KFTKIANSGL NEEMPDILRD DASPGNCVKT 720 SSPNGKRVSP PHNALSVSPS QKGGRKLILK SIPSFPSLIG DASSGSSMNS SESAFNTASP 780 LALGPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 472 | 593 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 472 | 593 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 456 | 460 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065897 | 0.0 | AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646690.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0E0E839 | 0.0 | A0A0E0E839_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G03420.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-84 | TESMIN/TSO1-like CXC 2 |