 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OMERI07G01690.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 406aa MW: 44581.9 Da PI: 6.5717 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI07G01690.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.3 | 2.7e-05 | 295 | 320 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++C+ +C ++F+++ +L +H ++ +
OMERI07G01690.1 295 FQCEidYCRMTFKNRAELSVHKKNtC 320
89*******************99866 PP
|
| 2 | zf-C2H2 | 13.3 | 0.00025 | 319 | 342 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23
+C+ Cg++F+++ +L+rH++ H
OMERI07G01690.1 319 TCTvkSCGRHFRSHKYLRRHQSIH 342
588889***************999 PP
|
| 3 | zf-C2H2 | 10.8 | 0.0015 | 378 | 402 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
ykC+ C+k ++ s+++rH r++
OMERI07G01690.1 378 YKCTtpGCSKIYKFVSDFTRHKRRC 402
99*********************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MEVTKGISLV TEASADSELA HRVPTEPGVE LSLPEVTERV PVVTEDFTEL GDTFSGLHIT 60
GFASLDNEGS VEQEVTGSCS LVNEATEMEV KEGTCIFTRV ATELGDTGRV SACSGDGDIA 120
LDEPRPPDCV SEVANVNVGN AGEAVASKVQ PFRDNAESFG GSINSTGNGH VSSKGPTADE 180
AAPPGGCTDT PSASCLSDIL ARSIGKSGRT DIICYVRRRG KRKLEMVEVK EENVEMDDSA 240
ICDQYDDKVA SERTGPCESV TSTAVSVEIK IADIKRDLED NSTASKGKKK RAKRFQCEID 300
YCRMTFKNRA ELSVHKKNTC TVKSCGRHFR SHKYLRRHQS IHNDDMPYKC PWEGCSMAFK 360
WSWDRGEHFQ VHAGKRPYKC TTPGCSKIYK FVSDFTRHKR RCKPQR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6a57_A | 3e-41 | 295 | 401 | 23 | 129 | Lysine-specific demethylase REF6 |
| 6a58_A | 3e-41 | 295 | 401 | 23 | 129 | Lysine-specific demethylase REF6 |
| 6a59_A | 3e-41 | 295 | 401 | 23 | 129 | Lysine-specific demethylase REF6 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 216 | 222 | RRRGKRK |
| 2 | 216 | 223 | RRRGKRKL |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC105734 | 0.0 | AC105734.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0050N02, complete sequence. |
| GenBank | AK068803 | 0.0 | AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
