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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
OMERI06G27970.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
C2H2 |
| Protein Properties |
Length: 353aa MW: 38297.8 Da PI: 7.6356 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI06G27970.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.3 | 1.3e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+Cp C+++F++ + H+r+H
OMERI06G27970.1 58 YPCPLCDRHFPTEKAVHGHMRSH 80
99********************9 PP
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| 2 | zf-C2H2 | 17.3 | 1.3e-05 | 224 | 246 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+Cp C+++F++ + H+r+H
OMERI06G27970.1 224 YPCPLCDRHFPTEKAVHGHMRSH 246
99********************9 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 4.6E-6 | 57 | 128 | No hit | No description |
| PROSITE profile | PS50157 | 10.055 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0013 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.4E-5 | 58 | 81 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 8.8E-8 | 105 | 129 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.014 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 2.4 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.99E-6 | 223 | 294 | No hit | No description |
| SMART | SM00355 | 0.0013 | 224 | 246 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.055 | 224 | 251 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 1.4E-5 | 224 | 247 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 226 | 246 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 8.8E-8 | 271 | 295 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 2.4 | 272 | 294 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.014 | 272 | 299 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 274 | 294 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MAGQPQVFVH HHGHALGGGS GDDDPTHPWL SLKSSHEIDD AVASWREKLA DMAAGGRYPC 60
PLCDRHFPTE KAVHGHMRSH PGRGWRGMEP PPGDLALAAD GKRYRYVCDR CKAPFETRQA 120
LGGHRASHST KKGCSWHAKQ LAMEMASKPP KNDFDLNHLS LEAIQAAQEE QAAAAQEGCS 180
SITTGTPSVA APATTTPPTH GCPSNDAVAS WREKLADMAA GGRYPCPLCD RHFPTEKAVH 240
GHMRSHPGRG WRGMEPPPGD LALAADGKRY RYVCDRCKAP FETRQALGGH RASHSTKKGC 300
SWHAKQLAME MASKPPKNDF DLNHLSLEAI QAAQEEQAAA AQEGYKDEAE PNN
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK108097 | 1e-178 | AK108097.1 Oryza sativa Japonica Group cDNA clone:002-139-A09, full insert sequence. |
| GenBank | AP004685 | 1e-178 | AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10. |
| GenBank | AP014962 | 1e-178 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012614 | 1e-178 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
