PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G27320.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 308aa    MW: 31909.6 Da    PI: 4.9316
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G27320.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.8e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +  +++   C  ++  lC  C    H+       H++ pl
  OMERI06G27320.2  4 QCDVCAAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47
                     7*****************************76889999988775 PP
2zf-B_box26.41.4e-0864105338
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                      ++ C+ + ek+   fC +++  lC+dC + +H+       Ht
  OMERI06G27320.2  64 APLCDVCREKRGLVFCVEDRAILCADCDEPIHSAndltakHT 105
                      579*****************************6577777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.267147IPR000315B-box-type zinc finger
CDDcd000217.76E-6347No hitNo description
PfamPF006434.1E-5447IPR000315B-box-type zinc finger
SMARTSM003366.2E-1762109IPR000315B-box-type zinc finger
PROSITE profilePS501199.55662109IPR000315B-box-type zinc finger
PfamPF006435.7E-665106IPR000315B-box-type zinc finger
CDDcd000211.54E-765109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSSSGDGG  60
AAAAPLCDVC REKRGLVFCV EDRAILCADC DEPIHSANDL TAKHTRFLLV GAKLSPAALA  120
EQPVPSSDCS SDDDAAAAAT EEEYHSSAAS TGAAVSAPLD ASSNGAGGGG GVGGSSISDY  180
LTTICPGWRV EDLLPDDDAF AAAAAQAGKE KDERVPFLDA DLFDVVAGRP EKKGGAWAPH  240
VPHLPAWCLD EVPVQVAASA APAATPVKAK QGHVRDSHWS DSDAFAVPEF SPPPSAKRAR  300
PSSQFWCF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018840.0AB001884.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1479.
GenBankAK1059570.0AK105957.1 Oryza sativa Japonica Group cDNA clone:001-205-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641370.11e-149B-box zinc finger protein 20 isoform X1
TrEMBLA0A0E0E6B00.0A0A0E0E6B0_9ORYZ; Uncharacterized protein
STRINGOMERI06G25650.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-39salt tolerance homolog2