![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI06G24090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 22450.4 Da PI: 7.8538 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.2 | 1.7e-14 | 29 | 76 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr+h+e+Er+RR+riN +++Lr l+P+a +++Ka+ L ++v+Y+++L OMERI06G24090.1 29 RRSHSEAERKRRERINAHLDTLRGLVPSA-----SRMDKAALLGEVVRYVREL 76 99**************************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-15 | 27 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.111 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-12 | 29 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.85E-11 | 31 | 77 | No hit | No description |
SMART | SM00353 | 5.8E-12 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.2E-4 | 117 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MVAARSGDDA ELGLDVECLA AAARRTRARR SHSEAERKRR ERINAHLDTL RGLVPSASRM 60 DKAALLGEVV RYVRELRSDA AGSAVVVPGE GDEVVVEEEE GCSCDAGERR QARRVKASVC 120 CADRPGLMSE LGDAARSVSA RAVRAEIATV GGRTRSVLEL DVARTAAAAA GGGSFSQLPA 180 LQAALRAVIM SQEELLAVES YKRLRFSADF A |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 35 | 40 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005755 | 1e-180 | AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14. | |||
GenBank | AP014965 | 1e-180 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006661325.1 | 4e-76 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A0E0E508 | 1e-141 | A0A0E0E508_9ORYZ; Uncharacterized protein | ||||
STRING | OBART09G13210.1 | 1e-113 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-14 | bHLH family protein |