PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G22120.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 2065aa    MW: 227175 Da    PI: 7.6393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G22120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-0519361957627
                       -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                       C+ f +tG+C+ G+rCk +H++
  OMERI06G22120.1 1936 CPVFEATGECPQGSRCKLHHPK 1957
                       *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.918261854IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.03718261855IPR000571Zinc finger, CCCH-type
SMARTSM003561418551879IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.85918591880IPR000571Zinc finger, CCCH-type
SMARTSM003560.009418811906IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.23518811907IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-519081934IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7619081935IPR000571Zinc finger, CCCH-type
SMARTSM003561.119351957IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.43719361958IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2065 aa     Download sequence    Send to blast
MDPPPPFDHP LHRRHYSDHH HFPPGGSGSS GGAASAAARS RYEYGGSGGY EPHSHHQYHL  60
PDHHHHHHPP PRVQHHHHHH HQQLPAPTPP PPPPPPLPQH RLEPPPPHYG FSPRGHPDAY  120
SPPPYHDPSP HHHYHRHGGD DFLPADEIRR VGGGHHHHHH PQLQQLLPWE EAEEERRRYG  180
GATQQLRLSP SGPRKRQRCA VHDADVESTS SSGPPPRRQR QQPHPDYALD DSFVDRNNAH  240
PGYMGHEGFS IHSDSKVSRK IQMPTQMALP GSPHGTGAGY ARRAPQKLAP SRVSVWHRIE  300
ENPAMYEPSS PPPHMPKEVH VSPCKSNNVA PALKELASVI SVDCRGKSAD GNDGDSNTGT  360
KKNPVKKNEK MLASVLVKPP MEPKEKEVAA KRMLKKPDKV QKNAVDSSIR SLVSTPCPGA  420
GAKKVKKIVI KKIVRKINGK GNQNSTPVVS EKRVSIDANA CEKEEGEITT SSFEKDAISA  480
HDPIAISDTS GFGNAVNDQK QKNTIFTNPS GRNAASAIGT TEIPDPPNGS GSAHPGKEEV  540
RSPKNSVDNN NASLVVEPIE VLEKSGTEHP RKEHDMSSIG SGVNDAFTDA NNHTQKEVGE  600
MNVAVAINSV RVSDAWEVPR CDDSSMEESK VPKDVDANNA VCMDGVASNC DTTEVCGNED  660
ARRECGKKLI GINNEKAFLL NNYARSSSTS DTCMTAVEGA QKKEGIILTG SCEKSIGFLG  720
DTVGTHRTTK FGASKDAPNE GDGVPSHPSE KDFMSLNYCG GLNYTEVSEK EDIQEKEDRV  780
PMESIVACTS SGNEDIQVNE GRKPMELSEA NAFSGSEDIQ GKECRIPMGS SETNTSSVNH  840
VNASNEKDVS LSEDTQKKES HRPIESCENT TFEIMHHEEA PSTEEVITGV SLGRKVAEGP  900
MRSNERCSRA RGNSATTLKF GLACATEDNQ MEDLLNNRTA LNETDDPLDA EDSPVFVPPS  960
SRNVESTYAS PLYDPMEDST SDGILNIGLG RNTTSKAAEL LDLHRDHMSS ENDSLIHSRG  1020
TSSVSGNREQ SVPTALTLGS NIYFSSAETD DRPEERHELV VEGQQGLTVE TTRKLDRPGK  1080
IEVLNGAGFI SAGIQNWLSL PPSINSMEMS GQFLNNGFTV SKGRLGLDQS MDDATSVSQD  1140
HDIAQDMDQR GSEDAFFSQD HSIRLCGSDL PHSHLLAPKE SSMNGEDQSG IVLTGLHPSS  1200
SVNVLGHYGY QTDDIPVDNL NKLPSALESS DAMDADQVSS QVCVNPDHTN DSNTENAGVE  1260
SNAKQDLLSS WIEAIVSEAK KEHPPCKSTA LTVGLPDKLL EPKDSDRKTV LETVVPSAVK  1320
SPQINFASST LQKVAPKQVT LPSSSREPTR ANQNARHRTW HRGNIASSSS SLHASQPLGL  1380
PPKLPPKKND KAQNSYIRKG NALIRNPSNG NHPHSSTGQD TQNKLNKPVV RRSMNFVRKA  1440
DTKDLANSNI SVERPKTPPL PLHTKSSCPT TLLEPLSQTL QKQNGHEAEK EDLTGQPKSG  1500
VDNSSIKSAQ KSEPSDPSKV VYVRPKSNQL VAAQRQHPVD LVNSSTDKIL SLQAPIASDL  1560
YLKKRKNQIV LSSCSPSDGL STKEMLPAEN SNSEEKKDLM IACSISGIPG VKDRPQKALQ  1620
TTNNVGRFSH VWTLNGQQPQ RKGFMGNSHM NAFPRILPWK RKIFCNNFRS SHMSNVSSIR  1680
IVRKLLQTRK RDMIYTVSTD GFSLRKSGVL SVGGSSLKWS RSLEKRSQKV NKEATLALAE  1740
VERRKREKRK RQSLHDKGDH QFESITGNQL RNNRQSSSDL RKPSTCNEYV RVSKGNQLVR  1800
NPKNVIRMLA SDKVRWSLHT VRSRLAKKQQ YCQFFTRFGE CKKPRGKCPY IHDRAKVTIC  1860
TKFLKGLCSN TSCKLTHKVL PERMPDCSYF LRGLCTNIAC PYRHVKVNLN APVCEDFLKG  1920
YCAYGDECHK KHSYVCPVFE ATGECPQGSR CKLHHPKSKV KSKSRRPDFL QNSSWGRYFD  1980
ASIDHQDETR KVSLDEDERE KPQRVFSDGD LGFINLDDDA DEDVTALDAS DDIPLMELDS  2040
GDLSAQTDNL DALIKPLRIM RTARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C1e-151832195741168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C1e-151832195741168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117421747RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035730.0AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643043.10.0uncharacterized protein LOC4341610 isoform X2
TrEMBLA0A0E0E4430.0A0A0E0E443_9ORYZ; Uncharacterized protein
STRINGOMERI06G20520.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67031010