PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G19110.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 319aa    MW: 35180.5 Da    PI: 4.8302
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G19110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.85.1e-31411332102
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa  +Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll
  OMERI06G19110.1  41 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHLL 125
                      9********************9899******************************************99.........**************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  95 ekikrkks 102
                       +i+r+++
  OMERI06G19110.1 126 ANIRRRRR 133
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-5037131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-2937131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3238131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2641131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-164164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-168092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1693105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDYSTVKQEV VEVVVVDGEE EAAAPVPLPA AMGVGAAVAP FLVKTFEMVE DPATDAVVSW  60
GGAARNSFVV WDPHAFAAGL LPLHFKHANF SSFLRQLNTY GFRKVSADRW EFANEDFLGG  120
QRHLLANIRR RRRRRGASTP RAVDRLRRDK EALARELARL RRQQQEARAQ LLDMERRVRA  180
TERRQEQCTA FFARALRSPD VLDNIARRHA AAAPVEGKKR RMLAAAAAAP DDDDGLTFEA  240
LALAAAADTS HSTGGAVTTD MIWYELLGEE QAEIDIEVEQ LVASAAADTA SEAEPWEEMG  300
EEEVQELVQQ IDCLASPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-203613115120Heat shock factor protein 1
5d5u_B4e-203213116129Heat shock factor protein 1
5d5v_B4e-203213116129Heat shock factor protein 1
5d5v_D4e-203213116129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657062.11e-148PREDICTED: putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-149HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A0E0E2Y10.0A0A0E0E2Y1_9ORYZ; Uncharacterized protein
STRINGOMERI06G17590.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.18e-50heat shock transcription factor A7A