PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G16990.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 292aa    MW: 30620 Da    PI: 5.894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G16990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08197243455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + + + + RR+ri +++  L+el+P+      +K++ +++L +A+ Y+k +q
  OMERI06G16990.1 197 TQSSAAKSRRERISERLRALQELVPSG-----GKVDMVTMLDRAISYVKFMQ 243
                      56677899*****************98.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.40E-11191247No hitNo description
Gene3DG3DSA:4.10.280.101.8E-11191251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-13192253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.526193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5197243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-10199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAMVAGDEAM SMSWHDVGVV VDPEAAGTAP FAAAAGGYVP SYDQCQYYYY DHQHHHPCST  60
ELIHAGDAGS AVAVTHDDVD CLVHAAAAAT SPSSSSALTF DGHGEEHSAV SWMDMDMGAH  120
ATVPPLIGYA PTATTSSSSC FSSGGSGDSG MVMVTTTTPR SAAASGSQKR ARAPPSPSQG  180
AELHEYSKKQ RANNKETQSS AAKSRRERIS ERLRALQELV PSGGKVDMVT MLDRAISYVK  240
FMQLQLRVLE TDAFWPAADG AAPDISRVKD ALDAIILSSS SPSQKASPPR SG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362780.0CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642667.11e-144transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0E0E2790.0A0A0E0E279_9ORYZ; Uncharacterized protein
STRINGOMERI06G15710.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1880188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-36ROOT HAIR DEFECTIVE6