 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OMERI06G13990.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
CO-like |
| Protein Properties |
Length: 408aa MW: 43904.9 Da PI: 4.9544 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI06G13990.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 20.8 | 8.2e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
C+ ++e++ +C+++ lC +C + H+ Ht++
OMERI06G13990.2 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
6*****************************657888889876 PP
|
| 2 | zf-B_box | 22.1 | 3e-07 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
C+++ ++++ C + lC++C ++H+ H++++
OMERI06G13990.2 47 LCDRCVSQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89
7*****************************6688899999876 PP
|
| 3 | CCT | 64.9 | 2.4e-22 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+
OMERI06G13990.2 351 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 394
899**************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVSQPAMVRC 60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN 120
CEQGISMMSI SDSGVSNQGI AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL 180
PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE 240
QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKG DSSLCIPVRQ 300
ARSSISLSFS GLTGESSAGD YQDCGVSPVL LMGEPPWHPP GPEGSFAGAT RDDAITRYKE 360
KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD PLCETRSY
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 360 | 364 | KKKRR |
| 2 | 360 | 365 | KKKRRK |
| 3 | 361 | 365 | KKRRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK098865 | 0.0 | AK098865.1 Oryza sativa Japonica Group cDNA clone:J013001A08, full insert sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G48250.1 | 4e-95 | B-box type zinc finger protein with CCT domain |
