PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G12850.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 328aa MW: 33571 Da PI: 6.9936

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G12850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.3e-38	72	128	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++cprCds+ntkfCyynny+lsqPr+fCkaCrryWtkGG lrnvPvGgg+rk k+ OMERI06G12850.1 72 EEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGCRKPKR 128 6789**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-32	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.087	74	128	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-27	75	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MERRSRAEQI DSAAQQAASL SQTFATKNPE APLPEASRIN LRSSNMQEFH PVPELAGRLF 60 GGVAAAAAAV VEEVRCPRCD SSNTKFCYYN NYNLSQPRHF CKACRRYWTK GGLLRNVPVG 120 GGCRKPKRPA PSSSSSSSFT GGGGCGHRDS KSARSAGGGG DGSGSSASAT ATPAAAAPAS 180 NTLSATVTQP SSVDALSPPP APMFADQATA YASLFAPPPP SQALPAFASF TAQPKAEEDV 240 ADEPALAATE QQRSSSAASF TVHSISPPFA AARSSDGPAA AAAAAADWAP PTAVLDAGMF 300 DLAGAIGGDT SYWNAASWTD HDGTIYLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004791	0.0	AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641761.1	1e-114	dof zinc finger protein 4-like
TrEMBL	A0A0E0E0M5	0.0	A0A0E0E0M5_9ORYZ; Uncharacterized protein
STRING	OMERI06G12010.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-32	OBF binding protein 4