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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G12470.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 47959.4 Da PI: 6.3078 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 1.9e-09 | 276 | 324 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OMERI06G12470.2 276 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 324 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.10E-10 | 271 | 328 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-17 | 271 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.516 | 273 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-17 | 274 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 276 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-10 | 279 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MTGREKEMNE KDATDLEERS EASEQSQALS FHGGAMFLQE AQIASPAAAS NALTAMANPF 60 PIPPGLWNPP SHNMGLGETS FSSLLVMLSA SAPPPFAAIP GFVDSAAGFP CYNGGNLGAM 120 INHPFPSIHQ PLGDFQNGVE PCREIEDIEI EGSKNLSQTG EKQQGDGETM HAVDSSSKEL 180 SMPGRNGGAG HDEGTRVSCS KKRKRSGQDG GVKHAEGGEQ LATVGSAQKN EDDEKGEPKR 240 SSVASGKSSG KQTKDNAGSP KEDYIHVRAR RGQATNSHSL AERVRREKIS ERMKYLQDLV 300 PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLASVNPT LDFNIERILS KDIFQSRGTT 360 ASSAFGFFPD IVHPRLHPPK YTQVGMPSTV NPTDAFGRVI HAPLGTNSAF KEPKHQMPNN 420 LNGEFQDVIE MPFTHDHHGS NDQP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 205 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103853 | 0.0 | AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643533.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
Refseq | XP_015643534.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
TrEMBL | A0A0E0E0I3 | 0.0 | A0A0E0E0I3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G11730.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 5e-69 | bHLH family protein |