PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G11100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 412aa    MW: 44132.6 Da    PI: 8.3907
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G11100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.33.5e-23304366163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL +kv eL+a N++L+ el++lkk ++ +++e+
  OMERI06G11100.1 304 ERELKRERRKQSNRESARRSRLRKQQECEELSQKVTELTAVNSTLRTELDKLKKDCEDMEAEN 366
                      89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-17297364No hitNo description
SMARTSM003384.5E-21304368IPR004827Basic-leucine zipper domain
PfamPF001706.1E-21304366IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093306369IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-10307361No hitNo description
CDDcd147022.57E-18309359No hitNo description
PROSITE patternPS000360311326IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAFTSATDAR VSTKPAVSDT SPHAPTDRWA RREATRLAHR ACATYTDTWT PHRAPVHVSS  60
PLARARCVGA VHPKPTRRHA TTHPPLSSRC SASAAAGSLA SPTPLSPARH GILGRLPSDD  120
ERRQDGDRDT RDPAASSAVA AAQTHAEWAA SMQAYYAAAA AAAGGHPYAW PPPQSVPPMA  180
GCAVPSAAAG EGKSKRKTSG GPSGEDSSGS GDGGSEDSSE RRDDADEKGW SPAKWRKLGH  240
PDIEGETSQA AAMSEQHPVK AAPNLNIGMD IWSNSTMAAM PSGQAEVNAG TSLRRDKVLS  300
QMDERELKRE RRKQSNRESA RRSRLRKQQE CEELSQKVTE LTAVNSTLRT ELDKLKKDCE  360
DMEAENSQLM DEMAQSEGSS VITTLSIKID TSKDRHGSSS QLNKRTNDDS KG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326RRSRLRK
2320327RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355950.0AC135595.5 Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879816.11e-166DNA-binding protein EMBP-1 isoform X5
SwissprotP250321e-48EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0E0DZX60.0A0A0E0DZX6_9ORYZ; Uncharacterized protein
STRINGOMERI06G10440.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.26e-30G-box binding factor 1