PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G09430.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 208aa    MW: 22406.1 Da    PI: 4.6655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G09430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-181565155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +  +g+WvAeIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  OMERI06G09430.1 15 KKYKGVRLRQ-WGKWVAEIRLPNS---RERVWLGSYDTPEKAARAFDAAFVCLRG 65
                     59*****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-241579No hitNo description
PROSITE profilePS5103221.6671677IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-271679IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-191678IPR016177DNA-binding domain
PfamPF008471.8E-101664IPR001471AP2/ERF domain
SMARTSM003806.5E-291683IPR001471AP2/ERF domain
PRINTSPR003673.8E-91728IPR001471AP2/ERF domain
PRINTSPR003673.8E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRMQTKNTAA PAPEKKYKGV RLRQWGKWVA EIRLPNSRER VWLGSYDTPE KAARAFDAAF  60
VCLRGAGAAD AAGLNFPDSP LPVVARTRDL REVYASAVSH ANRPPPVAGE TAATALATVA  120
ALEHNEVREN IAPSSPLPAV QVVAPPAGSF DWSQLMVNSS PLYSPIVMGS HAYDDLAVWS  180
VTQPVAEFSE EDDENEGATS DELSSFDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14377172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055450.0AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.11e-119ethylene-responsive transcription factor ERF018-like
TrEMBLA0A0E0DZ941e-149A0A0E0DZ94_9ORYZ; Uncharacterized protein
STRINGOBART06G07840.11e-115(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-32ERF family protein