PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G08170.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 209aa    MW: 22061.1 Da    PI: 10.1399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G08170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08129169954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P  a      +l+ a++Le+A++Y+k L
  OMERI06G08170.1 129 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAIRYVKFL 169
                      699*****************966......9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.659120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-9123174No hitNo description
Gene3DG3DSA:4.10.280.105.0E-11124184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-13125186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5130169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEFDMAMDMM SQEQLMHIIS QLDSALASSP SPSTSPSASP PRQSPAAHVP VPPGLLNATM  60
VSTSRAQAAP PALHPAAAAT AVQSSSPGML YTTTRHAIGV INAAEEEAAA PRPRRRNARV  120
SSEPQSVAAR LRRERVSQRM RALQRLVPGG ARLDTASMLE EAIRYVKFLK GHVQSLERAA  180
AALHMHGGHA AAAAGFAGDA VYSCPSYYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046870.0AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882279.19e-87transcription factor HEC2
TrEMBLA0A0E0DYQ61e-145A0A0E0DYQ6_9ORYZ; Uncharacterized protein
STRINGOMERI06G07760.11e-146(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.19e-21bHLH family protein