PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G08130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 224aa    MW: 23050.7 Da    PI: 4.3314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G08130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-172573355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr ++ +g+Wv+eIr ps+   ++r++lg++ tae Aa+a++aa ++l+g
  OMERI06G08130.1 25 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 73
                     9****998.**********964...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.7332482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-282482IPR001471AP2/ERF domain
SMARTSM003809.0E-322488IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-182484IPR016177DNA-binding domain
PfamPF008471.5E-102573IPR001471AP2/ERF domain
PRINTSPR003675.2E-92536IPR001471AP2/ERF domain
CDDcd000184.02E-162583No hitNo description
PRINTSPR003675.2E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVKTTAATSN GAAARHGGGG KRAAYKGVRM RSWGSWVSEI RAPSQKTRIW LGSYSTAEAA  60
ARAYDAALLC LKGSAAADLN FPVRLPFDLP AAAMSPKSIQ RVAAAAAANA SSSSSAVVFA  120
GVDDSGGSSA SEASTPACSS SDGAASPSPV SSPETVISDV DVDYSLLADI EAFFQSPKCM  180
EYAMMDPCSA FFAPPPPPPA MAMEDECGWE EEGDIALWSF SSLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-131082672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046870.0AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881784.13e-99ethylene-responsive transcription factor ERF014
TrEMBLA0A0E0DYQ11e-157A0A0E0DYQ1_9ORYZ; Uncharacterized protein
STRINGOMERI06G07720.11e-158(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.15e-24ERF family protein