PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G08100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 296aa    MW: 31778.9 Da    PI: 10.9461
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G08100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.78.7e-1594183698
           DUF573   6 lwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                      +w++ De++lL + + f+a++g  p   d+ a++e +++sis+++ +  +  K++r K Kf +   +      ++ +++hd+ +  ls  +Wgs
  OMERI06G08100.1  94 VWNDADEVALLTAAVAFRARNGFAPRLpDMGALFESLRGSISSHIDQAKVYYKLKRNKSKFLHAPPQ----ATTTTATPHDRRVRALSAELWGS 183
                      8**********************98877***********************************9999....777899***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.0E-1494182IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSSSRRPPAR AAATEAAADA APLLHPSSPR SKKRSSSSRR AAAADRRPAK RAPNPTLSPR  60
GGAPSRKSER RRRPRSLALA VHGHASPSGG PGLVWNDADE VALLTAAVAF RARNGFAPRL  120
PDMGALFESL RGSISSHIDQ AKVYYKLKRN KSKFLHAPPQ ATTTTATPHD RRVRALSAEL  180
WGSELAPPAV EGDADAAEAA DERDAEEGYI GGNLNVSVRL PVVSEVLGDY WRKNGRVLSG  240
VSLERGLALV GPEEGRMVEA KWKRQLEVET QTQGHRHDLA KEVCAMLIDA VRGLGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047580.0AP004758.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0664C05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8305130.0CT830513.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA036D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641305.11e-151formin-like protein 5
TrEMBLA0A0E0DYP70.0A0A0E0DYP7_9ORYZ; Uncharacterized protein
STRINGOMERI06G07670.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.17e-09DNA-binding storekeeper protein-related transcriptional regulator