PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G07190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 478aa    MW: 50703.8 Da    PI: 5.1198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G07190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11327372555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  OMERI06G07190.1 327 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 372
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.95E-13320376No hitNo description
SuperFamilySSF474593.93E-17320382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-9327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDYSAGSYMW PGNSGSENYN FVGGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLSYN TQAHPLSGQI LPKGELPNNL LDLQQLQNNS NLRSNSIPPG VLQCNSTSGT  120
FDAKLDTPGL AELPHALSSS IDSNGSDISA FLADVHAVSS APTLCSAFQN VSSFMEPVNL  180
EAFGFQGAQN VVMLNKTSLP NGNPSLFDNA AMASLHDSKE FLNGGSIPSF GTVLQALGAG  240
GLKAAQQEQN VRNIPLPTFT SGSHLAVTDA QGPPLPSKIP PLIHDHKIEY PINHSSDVEP  300
QANSAPGNSA SAKPRTRARR GQATDPHSIA ERLRREKISE RMKNLQDLVP NSNKADKASM  360
LDEIIDYVKF LQLQVKVLSM SRLGAPGAVL PLLRESQTEC HSNPSLSAST ISQGAPDIPD  420
SEDSSAFEQE VVKLMETSIT SAMQYLQNKG LCLMPIALAS AISNQKGMAA AAAIPPEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0DYA00.0A0A0E0DYA0_9ORYZ; Uncharacterized protein
STRINGOMERI06G06930.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-57LJRHL1-like 3