PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G05430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 481aa MW: 53389.5 Da PI: 11.327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.5e-16 | 281 | 327 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L++l+P++ K +Ka++L +A+eY+k+Lq OMERI06G05430.1 281 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 327 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-20 | 274 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-20 | 274 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.076 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.98E-16 | 280 | 331 | No hit | No description |
Pfam | PF00010 | 1.6E-13 | 281 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-18 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MQPPARRTKK RGRRKKTAKK PQTPNASAST PPLARWMTHG DEYTKPLRDA HPGRSKKEKK 60 AGETRKKASQ NQKKPARDET RPSKRRRRAC VCKQASKPPT LLSSSARAER AAAEAARHGR 120 NTKKKRPHLP KTTTISSSSS SPSLLLSTSP HHHHHHLDRI LRSWLRRAWR RRRMDEQRGR 180 GGFDELVLLH QQQEQQRRRR EQQEEEEEEE VRRQMFGAVV GGLAAFPAAA AAAMGQQQVD 240 CGGELGGFCD SEAGGSSEPE AAAGARPRGG SGSKRSRAAE VHNLSEKRRR SKINEKMKAL 300 QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLSMRNGVY LNPSYLSGAL EPAQASQMFA 360 ALGGNNVTVA HPGTVMPPVN QSSGAHHLFD PLNSPPQNQP QSLILPSVPS TAIPEPPFHL 420 ESSQSHLRQF QLPGSSEFHK ILFLHVLLSV KDGVSWRDNA KAPPIITSRK SASLGRGCWW 480 H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 13 | RRTKKRGRR |
2 | 5 | 20 | RRTKKRGRRKKTAKKP |
3 | 64 | 86 | RKKASQNQKKPARDETRPSKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881998.1 | 1e-160 | LOW QUALITY PROTEIN: transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like | ||||
TrEMBL | A0A0E0DXL2 | 0.0 | A0A0E0DXL2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G04430.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI06G04330.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3336 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 5e-33 | bHLH family protein |