PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 266aa MW: 28064.8 Da PI: 8.6669

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G02490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	102	156	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k OMERI06G02490.1 102 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 156 788899***********************************************98 PP
2	HD-ZIP_I/II	125.1	3.2e-40	102	192	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk OMERI06G02490.1 102 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 192 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-19	89	159	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	98	158	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-18	100	161	IPR009057	Homeodomain-like
SMART	SM00389	2.8E-17	100	162	IPR001356	Homeobox domain
CDD	cd00086	1.49E-15	102	159	No hit	No description
Pfam	PF00046	7.3E-17	102	156	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	133	156	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.3E-11	158	192	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.3E-19	158	201	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MERQGLDLGL SLGLGLTTMA AAAATWPAAG FCLNSGMAEQ EVVRRDDVVV AAAEDERFAC 60 SPGSPVSSGS GKRTDRSGAG SGDEVDVDDA GCDVGGGGGG ARKKLRLSKD QAAVLEECFK 120 THHTLTPKQK VALAKSLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRW CDQLADDNRR 180 LHKELAELRA LKATPTPPAA APPLTTLTMC LSCKRVANAG VPSPAAAMFP GHPQFLCGFR 240 DHAGAASSSS YDGASSGLAK AVRAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059116	0.0	AK059116.1 Oryza sativa Japonica Group cDNA clone:001-022-E09, full insert sequence.
GenBank	EU847516	0.0	EU847516.1 Oryza sativa Japonica Group clone OsHD2B homeobox leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642539.1	1e-120	homeobox-leucine zipper protein HOX28
Swissprot	A2Y931	1e-121	HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
Swissprot	Q5VPE5	1e-121	HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBL	A0A0E0DWG9	0.0	A0A0E0DWG9_9ORYZ; Uncharacterized protein
STRING	OMERI06G02450.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-45	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]