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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G23580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 207aa MW: 23117 Da PI: 8.2632 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 35.6 | 1.8e-11 | 6 | 44 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 e+ +C+C +s+C ++YC Cf ++ +Cs +C+C++C+N + OMERI05G23580.1 6 ERPKCSCVQSSCTQLYCPCFRSRYFCSGNCNCTGCHNIK 44 5679*********************************75 PP | |||||||
2 | TCR | 44 | 4.4e-14 | 105 | 143 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+ k+C+C+kskC k+YCeCf++ + C+ +CkC++C+N+ OMERI05G23580.1 105 KHAKECSCRKSKCSKLYCECFKNSVGCTAKCKCQECSNS 143 5889**********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.2E-6 | 5 | 46 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 30.061 | 6 | 145 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.8E-9 | 9 | 42 | IPR005172 | CRC domain |
SMART | SM01114 | 2.1E-10 | 105 | 146 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.8E-11 | 108 | 143 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MANNQERPKC SCVQSSCTQL YCPCFRSRYF CSGNCNCTGC HNIKYYEDAI EEISDMIQMK 60 NPNAFDPKII VSVQDATAAD PQSSTSAISD PKNTSDAMPG NEQRKHAKEC SCRKSKCSKL 120 YCECFKNSVG CTAKCKCQEC SNSFGVKKSE SSNKPDDKNA TDGLTHEETR HMKNQLRKTS 180 RYLGKPGTLI QTNAQDIFDK LTTTFRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098598 | 1e-116 | AC098598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1007_H05, complete sequence. | |||
GenBank | AP014961 | 1e-116 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-116 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640260.1 | 1e-111 | protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
Refseq | XP_025881429.1 | 1e-111 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A0E0DV20 | 1e-151 | A0A0E0DV20_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G29120.1 | 1e-111 | (Oryza glumipatula) | ||||
STRING | ONIVA10G19520.1 | 1e-111 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 4e-19 | Tesmin/TSO1-like CXC domain-containing protein |