PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G21150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 456aa MW: 51047.8 Da PI: 4.8903 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109 | 3.4e-34 | 18 | 109 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+ye++ed+++++++sw g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+++ll+ OMERI05G21150.1 18 FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLLK 102 9****************************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k OMERI05G21150.1 103 NIHRRKP 109 ****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.5E-61 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.0E-37 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.9E-35 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.4E-30 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MESSNLGGGG GGGGPPPFLI KTYEMVEDAA TNHVVSWGPG GASFVVWNPL DFSRDLLPKY 60 FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EDFIRGHTHL LKNIHRRKPV HSHSLQNQIN 120 GPLAESERRE LEEEINRLKY EKSILVADLQ RQNQQQYVIN WQMQAMEGRL VAMEQRQKNI 180 VASLCEILQR RGGVVSSSLL ESDHFSKKRR VPKMDLFVDD CAAVEEQKVF QFQGIGTDAP 240 AMPPVLPVTN GEAFDRVEQS LVSLEKLFQR ANDACTAAEE MYSHGHGGTE PSTAICPEEM 300 NTAPMETGID LQLPASLHPS SPNTGNAHLH LSTELTESPG FVQSPELPMA EIREDIHVTR 360 YPTQADVNSE IASSTDTSQD GTSETEASHG PTNDVFWERF LTETPQSCLD ESERQESLKD 420 DVKAELGCNG FHHREKVDQI TEQMGHLASA EQTLHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-23 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-23 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-23 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB050096 | 0.0 | AB050096.1 Oryza sativa Japonica Group Spl7 mRNA for heat stress transcription factor Spl7, complete cds. | |||
GenBank | AK100412 | 0.0 | AK100412.1 Oryza sativa Japonica Group cDNA clone:J023087K12, full insert sequence. | |||
GenBank | AY344492 | 0.0 | AY344492.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639851.1 | 0.0 | heat stress transcription factor A-4d | ||||
Swissprot | Q93VB5 | 0.0 | HFA4D_ORYSJ; Heat stress transcription factor A-4d | ||||
TrEMBL | A0A0E0DU57 | 0.0 | A0A0E0DU57_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G20360.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 2e-66 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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