PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G18260.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 317aa    MW: 34088.9 Da    PI: 5.2467
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G18260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29.6e-25123183258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58 
                      +D y WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+ +dp+++++tY geH +
  OMERI05G18260.1 123 HDSYLWRKYGQKEIKNSKHPRLYYRCSYRddhGCTATKQVQQSEdDDPSLFVVTYFGEHFC 183
                      7***************************99999********9872579***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-25117184IPR003657WRKY domain
PROSITE profilePS5081119.416117181IPR003657WRKY domain
SuperFamilySSF1182903.01E-23119184IPR003657WRKY domain
SMARTSM007741.1E-37122185IPR003657WRKY domain
PfamPF031062.7E-25124183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MARTTAESNA ASRHVAKGRK AAARLHALLG QQLPAAAGSP PSSTLHGLWS SPSRSSAAST  60
ERSPRCTVAP PARRTTSLPA AAGNANRSAA RLVLELQRVR RGSVLNESFN PIPCRVEKKA  120
TMHDSYLWRK YGQKEIKNSK HPRLYYRCSY RDDHGCTATK QVQQSEDDDP SLFVVTYFGE  180
HFCGRVADVG CPVVAGDDGE ESEELIVISF GSSAAVAAAT GGASAAYPWP CCREDAKNSG  240
ASQPWSLPDC EEVPPLTANV AEELIEESTP ESELMGLISS PDLEYSLLDL ELGESSLGID  300
GFINFDELSV YSIDNAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20122183868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447374e-64AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149614e-64AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126174e-64CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.14e-49probable WRKY transcription factor 38
TrEMBLA0A0E0DT300.0A0A0E0DT30_9ORYZ; Uncharacterized protein
STRINGOMERI05G17340.11e-144(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-19WRKY DNA-binding protein 46