PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G18250.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 328aa    MW: 34792.6 Da    PI: 4.5997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G18250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY703.3e-22125191159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STT..EEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpk..vveitYegeHnhe 59 
                      +dD++ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s++   d+   v +itY geH+++
  OMERI05G18250.1 125 MDDKFLWRKYGQKEIKNSKHPRFYYRCSYKddhGCTATKQVQQSETaddDTAspVYIITYFGEHTCR 191
                      58***************************99999*******9986421133233789*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.96120170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-23121191IPR003657WRKY domain
SuperFamilySSF1182907.19E-22122191IPR003657WRKY domain
SMARTSM007748.4E-33125192IPR003657WRKY domain
PfamPF031069.1E-24126191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MALTMVSLAA IAGKPTAASA QFVAEGRESA ARLYALLVGS SALHGPVDLA EQILLCFDRA  60
LAKLHGVNLA GAEDDDDAAG NGNGRKRKPG RGRGLTAASA AASSKRMRVS NAGGNGARIE  120
RKATMDDKFL WRKYGQKEIK NSKHPRFYYR CSYKDDHGCT ATKQVQQSET ADDDTASPVY  180
IITYFGEHTC RHGDDAAAMV VDGGEEEDQL SPAQMVISFA SSNGGDASVS WPCSGDDAQN  240
NSETSHESSP PEAPAGEEEH LRPCTAAGVS DEPIMESTPP APELLADLKP MDGCLLDGES  300
LFGMDELVYF HELSAALGLL DRDWGAPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21125191869OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447370.0AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.10.0probable WRKY transcription factor 38
TrEMBLA0A0E0DT290.0A0A0E0DT29_9ORYZ; Uncharacterized protein
STRINGOMERI05G17330.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-20WRKY DNA-binding protein 38