PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G18240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 282aa    MW: 31516.9 Da    PI: 6.7915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G18240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.54.9e-17138199259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      +Dg++WrKYG K++ +sef + YYrC ++   +C++kk v++++ + p  + +t ++eH+++
  OMERI05G18240.1 138 NDGFHWRKYGEKNILNSEFRKLYYRCGYSderKCQAKKYVQQENnKHPPEFRVTLTNEHTCN 199
                      7**************************998899*******98761578899********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-18131199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-19132199IPR003657WRKY domain
SMARTSM007741.2E-26137200IPR003657WRKY domain
PROSITE profilePS5081112.656138201IPR003657WRKY domain
PfamPF031068.9E-20138198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MARRLPKSER SPSPPPPPPP PGDQRDAAIQ ELSKGSELAT QLMAQLELIP ERELDGRRDD  60
ALANVRSLSM FLSSSLYALR SERREHYYCG SSSSSGGAGP AAVTSVSGAG GARKTKRRRG  120
KHGEELIETV FITTTPENDG FHWRKYGEKN ILNSEFRKLY YRCGYSDERK CQAKKYVQQE  180
NNKHPPEFRV TLTNEHTCNT VFQDQPSSSS TNSQVLDFTK ASISSSLMDS HVGAPILKEE  240
EEEEVPSIDE STRIMSTIMR NYGSYGDYDE SSPQPWNGAG WK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364070.0CT836407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638351.11e-170probable WRKY transcription factor 63
TrEMBLA0A0E0DT280.0A0A0E0DT28_9ORYZ; Uncharacterized protein
STRINGOMERI05G17320.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.12e-14WRKY DNA-binding protein 64