PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G18170.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 357aa    MW: 38020.9 Da    PI: 4.5633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G18170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.32.3e-26157217259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+edp++ +itY g+H+++
  OMERI05G18170.1 157 EDGFLWRKYGQKEIKNSKHPRLYYRCSYKddhGCTATKQVQQSEEDPSLYVITYFGDHTCS 217
                      7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-27151217IPR003657WRKY domain
PROSITE profilePS5081121.138151219IPR003657WRKY domain
SuperFamilySSF1182903.27E-25152218IPR003657WRKY domain
SMARTSM007741.0E-39156218IPR003657WRKY domain
PfamPF031064.5E-26157216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MALIATGATA TATAAPVASP AASSMASELM AQGRESAAVL EALLHGASLP PAHGGAHALA  60
AEILRCCDRA LAALRAGGDA ESSSADTKRK PAAAQPSTRR RRRYIAYMYM YVSSRSCDGA  120
RDRAATQQEI FCRATASGGG AAAAAEPARV EKARTSEDGF LWRKYGQKEI KNSKHPRLYY  180
RCSYKDDHGC TATKQVQQSE EDPSLYVITY FGDHTCSCQT AAAAAMDDDD DDENSQHFVI  240
NFGPATASRS GSPPLLYDGD VWRETAATPP SSRQSRCSPE GDGEESGVKM SKEEPVDSCP  300
APSAVSSPAD VVSCSSPAME PDLLGCLNWD DDFGDSSFVD ADEFMNFDEI DLFQIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-21157216968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187102KRKPAAAQPSTRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638904.11e-174probable WRKY transcription factor 70
TrEMBLA0A0E0DT200.0A0A0E0DT20_9ORYZ; Uncharacterized protein
STRINGOMERI05G17240.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-21WRKY DNA-binding protein 70