PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G18120.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 824aa    MW: 91476.4 Da    PI: 7.7303
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G18120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-16124222199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+l++sd+  ++r+ +p + a++      + k  ++  l+++d++g  +++ +   ++++r++l+k Wk+F ++ +  +gD+v+F++ + ++
  OMERI05G18120.1 124 FVKTLMSSDAEYRDRFAVPMDVAKDVfpplvDAKAVQP--LIVKDLQGSPMTFDY--GRNGNRVTLAKVWKKFRDDMDFVDGDSVIFMRRR-DD 212
                      89*********************999**9986666676..9**************..*******************************544.88 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                       el+v+v+r+
  OMERI05G18120.1 213 DELYVGVRRQ 222
                      889*****97 PP
2B3482.2e-15504602198
                      EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k lt  d+ k+  r+++pk+ a+     +++ +e++ l ++d +g++W ++++++ +   ++l++GW +F++an+L +gD vvF+++  +++
  OMERI05G18120.1 504 FVKPLTCTDAVKNrYRFIVPKREAAMGvlpQLQLNEHVPLYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSM-DSG 594
                      56666655555554899*******766999555568888***************776665..99***********************765.444 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      e +++++r
  OMERI05G18120.1 595 ERYMGLRR 602
                      44666655 PP
3Auxin_resp27.21.7e-10620695482
       Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkm..afetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+  ++Fev+Y  r+   eFvv++  v++al+ k+++Gm + +  a+e++  ++   +G v++++++       S Wr++
  OMERI05G18120.1 620 RAARLEPFEVTYLSRQDGDEFVVPCGIVHNALRAKFTPGMVVNFvwAVEEDRLPNVGPQGKVIAIENY-----ATSIWRMI 695
                      567779**********************************877611555555666666********95.....55888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-17118224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-16119228IPR015300DNA-binding pseudobarrel domain
CDDcd100175.63E-12122221No hitNo description
SMARTSM010191.8E-9124223IPR003340B3 DNA binding domain
PfamPF023625.4E-13124222IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983124223IPR003340B3 DNA binding domain
SuperFamilySSF1019365.36E-17501601IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-20502603IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-15503602No hitNo description
SMARTSM010194.0E-5504604IPR003340B3 DNA binding domain
PfamPF023621.7E-11504601IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155505604IPR003340B3 DNA binding domain
PfamPF065073.8E-7621695IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MAAAAAALAD DGDGIVDRAM WLACAAPNSG RLPAVGSMVF YFVDGHAEQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAD ITLDPVADHD VPRLLPAPAP AAAAGGQQQQ  120
LRYFVKTLMS SDAEYRDRFA VPMDVAKDVF PPLVDAKAVQ PLIVKDLQGS PMTFDYGRNG  180
NRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL  240
PVAVQEVIAA AGRAAAGEQF TATYRSRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW  300
ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA  360
PPPPLSPKRL KSSEDHLPPP KASASAAAAK ASPSSSAQAQ QFSITREMWR ACAAPKSGRL  420
PAVGSFVYYF PDGHAQQCPS RPPEPLPGRV FLCKVTAVRL DATRNELFAT MSLIPVARDQ  480
AIQPQAPADP GPSSPQVQTT LVSFVKPLTC TDAVKNRYRF IVPKREAAMG VLPQLQLNEH  540
VPLYIKDMHG KEWVINYTWK EYTHMLSSGW IKFANANRLV TGDNVVFMRS MDSGERYMGL  600
RRTLKPEPVS VDEVIEAVWR AARLEPFEVT YLSRQDGDEF VVPCGIVHNA LRAKFTPGMV  660
VNFVWAVEED RLPNVGPQGK VIAIENYATS IWRMIQVEWP SCAGMNRYVN FWQIREVLGE  720
SSFEASTCIV RSQDYSPAPQ RNLVNALQLP DGTKQLQQNK KSVSSSSTFR LFGKKMTPGV  780
PPRRETSGLS GQVSLFSHYL PHDEDDGQVP TMRQRLETLF PDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A8e-2517141352Auxin response factor 1
4ldw_A8e-2517141352Auxin response factor 1
4ldw_B8e-2517141352Auxin response factor 1
4ldx_A6e-2517281363Auxin response factor 1
4ldx_B6e-2517281363Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882777.10.0B3 domain-containing protein Os07g0183300/Os07g0183600
SwissprotQ8H5060.0Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLA0A0E0DT150.0A0A0E0DT15_9ORYZ; Auxin response factor
STRINGOMERI05G17190.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.48e-29auxin response factor 2