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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OMERI05G13210.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
SRS |
| Protein Properties |
Length: 327aa MW: 33014.6 Da PI: 8.5011 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI05G13210.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 224.5 | 2.1e-69 | 100 | 265 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkls 92
sg+a+C+dCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerqq + aass ++sa ++a++k++r l s++++++s+t++s
OMERI05G13210.2 100 SGAATCHDCGNQAKKDCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTSSAfpatTTASAKKPRLLGSQTTTTTSRTSTS 193
7889*************************************************9999999999889998999999****99************* PP
DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+a+++++++tss lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++
OMERI05G13210.2 194 NATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 265
**********999********************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MVLVAPAASY HHHRAAAAAA AAAAAEPVFP LLGTGQCALD ADTAKSSGAA AAAGVPPGSA 60
SAIHFWQSQP TTAAGAGGGS ADKKPLPMLD YGGIGGPGGS GAATCHDCGN QAKKDCVHHR 120
CRTCCKSRGF DCPTHVRSTW VPAARRRERQ QLAGAASSPP TSSAFPATTT ASAKKPRLLG 180
SQTTTTTSRT STSNATTPRS FDTSSSHQVA SFRDALPRHV RAPAVFRCVR VTSVDDGDDE 240
FAYQAAVTIN GHMFRGFLYD QGADDGRGGM ASTSNDESSH AGAAAAVPSI SDLHLGSASA 300
AVPPHLYSGG SGGPLILGGL GYGNTMN
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC104710 | 0.0 | AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence. |
| GenBank | AC136219 | 0.0 | AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 6e-54 | Lateral root primordium (LRP) protein-related |
