PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G12850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 550aa    MW: 56507.4 Da    PI: 5.3313
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G12850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS229.31.8e-7012650534374
             GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdis.qGlQW 125
                      +g++ qRla+ f+eALa r    +++++++l+ +++++     + aa++ f  ++P+++++  +aN  I e +e e   vH++D++ + +  QW
  OMERI05G12850.1 126 EGRSAQRLASAFAEALALRFILPCDGVCRSLHLTRAPP--PPAVSAARQGFRAMCPFVRLAAAAANLSIAEVMEAErGVVHVVDLGGGvEANQW 217
                      6899***************************8888875..6677789999**************************7788*****875389*** PP

             GRAS 126 paLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlvlqlh 211
                      + L + La+Rp+gpp  lR+T+v++    s++ l++ +   a  A++l+++++f+++  +++e+l         ++L v pg  laV   lq+h
  OMERI05G12850.1 218 VELVRLLAARPGGPPgLLRLTVVNE----SEDFLSAAAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGQPLAVVANLQIH 306
                      ***********999989********....9**************************5.66666662222222235678888************* PP

             GRAS 212 rll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279
                      rll                           ++++ + d++L+++++l+Pk+vv++e+eadhn +++  r+ +al+yy+alfd+lea+  + +  
  OMERI05G12850.1 307 RLLafpddvdgvasrrpaaeqsgssqhMMMTTTKTKADALLRTIRDLNPKLVVLTENEADHNVAELGPRVWNALNYYAALFDALEASSTPPApv 400
                      **********************9988622333333679**********************************************7764333346 PP

             GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.......yrveeesgslv.lgW 362
                        +er+ vEr +lg+ei++++  eg+ rrerhetl++W er+ +aGF+pv+     a++ ++l +++    g        r  +  g++  ++W
  OMERI05G12850.1 401 ppHERACVERWVLGEEIKDIIVREGTGRRERHETLGRWAERMVAAGFSPVTAARALAST-ETLAQQIVaAGGggagagvLRAAHGGGCFPvICW 493
                      77************************************************987655554.4444443312223344434444455777757*** PP

             GRAS 363 kdrpLvsvSaWr 374
                       d p++svS W+
  OMERI05G12850.1 494 CDVPVFSVSTWT 505
                      ***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.1658477IPR005202Transcription factor GRAS
PfamPF035146.4E-68126505IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAAEIPRLAL GGGGGGAGGE RLPAAGEDSA PAATNAGKRP MMVGFGSSLA AMAAAAAAGI  60
QPDAFALGGP AEYPAGEGER DVLMVSFLRS IAAFLADGTC QMQVNDGLSC VVDLAGGDAD  120
GVGVGEGRSA QRLASAFAEA LALRFILPCD GVCRSLHLTR APPPPAVSAA RQGFRAMCPF  180
VRLAAAAANL SIAEVMEAER GVVHVVDLGG GVEANQWVEL VRLLAARPGG PPGLLRLTVV  240
NESEDFLSAA AAYVAAEAQR LDLSLQFHPV LSSIEELSAT ATGSIGSRLV VIPGQPLAVV  300
ANLQIHRLLA FPDDVDGVAS RRPAAEQSGS SQHMMMTTTK TKADALLRTI RDLNPKLVVL  360
TENEADHNVA ELGPRVWNAL NYYAALFDAL EASSTPPAPV PPHERACVER WVLGEEIKDI  420
IVREGTGRRE RHETLGRWAE RMVAAGFSPV TAARALASTE TLAQQIVAAG GGGAGAGVLR  480
AAHGGGCFPV ICWCDVPVFS VSTWTARRVL VPAPPLWPPA AAGGAGPSGS RYGGDGPSTA  540
SSSAAMWWVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2612750753381Protein SCARECROW
5b3h_A1e-2612750752380Protein SCARECROW
5b3h_D1e-2612750752380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLA0A0E0DQV10.0A0A0E0DQV1_9ORYZ; Uncharacterized protein
STRINGOMERI05G12130.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-37scarecrow-like 3