PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G10380.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 393aa    MW: 41788.7 Da    PI: 5.5928
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G10380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.62.5e-23182243159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg +WrKYGqKe+++s++p++Y+rCt++    C+++++v+r+++dp    +tY geH+++
  OMERI05G10380.1 182 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQVQRCDDDPASYRVTYIGEHTCR 243
                      58***************************98878*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-25169245IPR003657WRKY domain
PROSITE profilePS5081120.61177245IPR003657WRKY domain
SuperFamilySSF1182903.92E-23180245IPR003657WRKY domain
SMARTSM007741.4E-34182244IPR003657WRKY domain
PfamPF031067.3E-22183243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
METDQKLLQV SRAAINTDLP PPQASCCFEL HHQLSCEEER VRDESARQRQ CSVSHWVCAC  60
LLGLRMTSSM SPAPAPPYAQ VMEDMEKGKE LADQLQGLLR DSPEAGRIVD QILHTFSRAM  120
RALDKAAVSA AGGEGSEVQS EVTCGGGASA GGKRKAPAAD RKANCRRRTQ QSSGKTVVVK  180
NLDDGQAWRK YGQKEIQNSK HPKAYFRCTH KYDQLCTAQR QVQRCDDDPA SYRVTYIGEH  240
TCRDPATAPI IAAHVIHQVA AGDDDDGCGG LHAGSRLISF VTAPAAPVDA AAAPTTSTIT  300
TVTAPGPLLQ PLKVEGGVGS SDQEEVLSSL TPGSSAVRGG GGGAAGPFGP DQGDVTSSLH  360
WSYDTGAFAV AGMEFFKDDE VVFDLDDIMG LNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-44176243269OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1039590.0AK103959.1 Oryza sativa Japonica Group cDNA clone:001-015-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637594.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0DPX10.0A0A0E0DPX1_9ORYZ; Uncharacterized protein
STRINGOMERI05G09810.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-25WRKY DNA-binding protein 70