PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G10350.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 429aa    MW: 43817.5 Da    PI: 7.1322
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G10350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.5e-26234293258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  OMERI05G10350.1 234 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 293
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-27225293IPR003657WRKY domain
PROSITE profilePS5081121.551228291IPR003657WRKY domain
SuperFamilySSF1182903.14E-24230293IPR003657WRKY domain
SMARTSM007748.1E-37233295IPR003657WRKY domain
PfamPF031069.4E-25234293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MHVFAPHQVT PLSVLLAAGG GGGFDRRDRS RVVGGGGGGG GGGEGGEMDE VLAQISEGFR  60
LAGELMSELV ATQNDPDYLA ARCHAIAGAY AAAARVLQGA RHGGGGVGAA STSFGGEGYL  120
HHQHRQQLDL LRMCGGGTAD EAAAAAAVNP FLGAPPPPTT TAFRAPSDAY GGAGAGTSGG  180
PVRRVSSSSR SPPSPSPVQP RQGGAGSRRR RESGEKVTVM VAAQRTGNTE QPPDDGYTWR  240
KYGQKDILGS RYPRSYYRCT HKNYYGCEAK KKVQRLDDDP FTYEVTYCGN HTCLTSTTPL  300
LTLPAAATSV TNSPTTAAVL GQDLVMAPAA EQPQPPPTLS TSIHLGIGWP MTPASLAGAV  360
GEGSTSTTAT APQVTTMGAT AAGGGGGAAA RDTDHYPVAD LADVMFNSGG SGSSSIMDGI  420
FSSHDRRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-22234293968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878170.0AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638743.10.0WRKY transcription factor 55
TrEMBLA0A0E0DPW80.0A0A0E0DPW8_9ORYZ; Uncharacterized protein
STRINGONIVA05G12080.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-37WRKY DNA-binding protein 55