PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G10040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 29418.8 Da PI: 9.8507 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 90 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +gr+ AeIrdp + kr +lg+f+taeeAa+ ++ a+++++g OMERI05G10040.1 90 RFRGVRRRP-WGRFSAEIRDP-----SlqKRLWLGTFDTAEEAAAVYDDAALRIKG 139 69*******.**********9.....445************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.12E-20 | 90 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 90 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.84 | 90 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-33 | 90 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-10 | 90 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 91 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-22 | 98 | 147 | No hit | No description |
PRINTS | PR00367 | 1.7E-9 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSPADSLAAG RSRRVGASMP RPKRVRVYFV DADATDTDSS GDERSRRLVR EVIDIDVGAA 60 SPAPKHPRRL VPTATAALAR RRAGMAASRR FRGVRRRPWG RFSAEIRDPS LQKRLWLGTF 120 DTAEEAAAVY DDAALRIKGS HAVTNFPSDS DTPSAKAKQM NLHPRRHTTP DKTTTTSSAA 180 AAAVPDTTPA PPEEDRANDS TFNPFASPTS VLRYASADEV AAPSFEHLLV ELGDLSAPPP 240 STKAAEFDWL PWWEGEDFVT AGLTASNAVS VK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 86 | 147 | 1 | 63 | ATERF1 |
3gcc_A | 1e-19 | 86 | 147 | 1 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 97 | RRAGMAASRRFRGVRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124141 | 0.0 | AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence. | |||
GenBank | AK110613 | 0.0 | AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637513.1 | 1e-155 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0E0DPS8 | 0.0 | A0A0E0DPS8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G09530.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13140 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 4e-08 | ERF domain protein 10 |