PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G07470.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 391aa MW: 40224.6 Da PI: 6.9832

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G07470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.5e-06	289	329	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P + K++ a++L +A Y+k L OMERI05G07470.1 289 ARLRRERVSDRLRVLQKLVPGgN------KMDTASMLDEAASYLKFL 329 599***************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.21E-10	271	334	No hit	No description
PROSITE profile	PS50888	14.189	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-13	286	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-10	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
METFGWAGGG QLMHHDDVYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGV VGGGDDGGCL 60 QGTSGFGGVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG 120 GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGYDAEVVSP TSTMSPATPS LHPKRKLYDD 180 HHHHPAGIAA AAAAPPLAPC PRPTTGAVAA KRRASTSATS ITFGHQPHHH HAGATTAGYE 240 PDMEAMAQVK EMIYRAAAMR PVHLGTEAAA DKPRRKNVRI SSDPQTVAAR LRRERVSDRL 300 RVLQKLVPGG NKMDTASMLD EAASYLKFLK SQVQKLETLG TTTTTSKLPQ HYYSGNINSG 360 NHHGFLGFAA NNSTISAGYA NSNAGNATKL L

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

METFGWAGGG QLMHHDDVYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGV VGGGDDGGCL  60
QGTSGFGGVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG  120
GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGYDAEVVSP TSTMSPATPS LHPKRKLYDD  180
HHHHPAGIAA AAAAPPLAPC PRPTTGAVAA KRRASTSATS ITFGHQPHHH HAGATTAGYE  240
PDMEAMAQVK EMIYRAAAMR PVHLGTEAAA DKPRRKNVRI SSDPQTVAAR LRRERVSDRL  300
RVLQKLVPGG NKMDTASMLD EAASYLKFLK SQVQKLETLG TTTTTSKLPQ HYYSGNINSG  360
NHHGFLGFAA NNSTISAGYA NSNAGNATKL L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	276	DKPRRKN
2	271	276	KPRRKN
3	289	294	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106119	0.0	AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBank	AP003273	0.0	AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBank	AP003381	0.0	AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629328.1	0.0	transcription factor LATE FLOWERING-like
Refseq	XP_015629344.1	0.0	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	3e-50	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A0E0DNR4	0.0	A0A0E0DNR4_9ORYZ; Uncharacterized protein
STRING	OMERI05G07090.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-34	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]